Embedded thumbnail for Tutorial: Recurrent neural networks for cognitive neuroscience
Recorded:
Aug 30, 2021
Uploaded:
August 30, 2021
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Computational Tutorials
CBMM Speaker(s):
Guangyu Robert Yang
Robert Guangyu Yang, MIT In this hands-on tutorial, we will work together through a number of coding exercises to see how RNNs can be easily used to study cognitive neuroscience questions. We will train and analyze RNNs on various cognitive...
Embedded thumbnail for suite2P: a fast and accurate pipeline for automatically processing functional imaging recordings
Recorded:
Jul 29, 2021
Uploaded:
August 9, 2021
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All Captioned Videos, Computational Tutorials
Speaker(s):
Carsen Stringer, HHMI Janelia Research Campus
The combination of two-photon microscopy recordings and powerful calcium-dependent fluorescent sensors enables simultaneous recording of unprecedentedly large populations of neurons. While these sensors have matured over several generations of...
Embedded thumbnail for Learning what we know and knowing what we learn: Gaussian process priors for neural data analysis
Recorded:
Jul 8, 2021
Uploaded:
July 12, 2021
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All Captioned Videos, Computational Tutorials
Speaker(s):
Guillaume Hennequin, Kris Jensen
Guillaume Hennequin, Kris Jensen - University of Cambridge Colab notebooks: Introduction to FA and GPFA as probabilistic generative models Fitting an example data set from a primate reaching task with GPFA Additional papers and resources...
Embedded thumbnail for Exiting flatland: measuring, modeling, and synthesizing animal behavior in 3D
Recorded:
Apr 8, 2021
Uploaded:
April 9, 2021
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Speaker(s):
Jesse Marshall, Harvard University
Mechanistic studies of complex, ethological animal behaviors are poised to define the next decade of neuroscience. Fully understanding the ontogeny, evolution, and neural basis of these behaviors requires precise 3D measurements of their underlying...
Embedded thumbnail for Linear Analysis of RNN Dynamics
Recorded:
Nov 19, 2020
Uploaded:
November 23, 2020
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All Captioned Videos, Computational Tutorials
Speaker(s):
Eli Pollock
Recurrent neural networks (RNNs) are a powerful model for neural and cognitive phenomena. However, interpreting these models can be a challenge. In this tutorial, we will discuss how dynamical systems theory provides some tools for understanding...
Embedded thumbnail for Nonlinear Dimensionality Reduction
Recorded:
Sep 22, 2020
Uploaded:
September 23, 2020
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All Captioned Videos, Computational Tutorials
Speaker(s):
Christian Bueno, University of California, Santa Barbara
Christian Bueno, University of California, Santa Barbara Working with lower dimensional representations of data can be valuable for simplifying models, removing noise, and visualization. When data is distributed in geometrically complicated ways,...
Embedded thumbnail for Using Lookit to run developmental studies online
Recorded:
Sep 3, 2020
Uploaded:
September 4, 2020
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CBMM Speaker(s):
Maddie Pelz
Lookit is an online platform for designing and running asynchronous developmental studies. This technology allows for more diverse and representative populations to participate in developmental studies than would typically be able to engage in the...
Embedded thumbnail for Adversarial examples and human-ML alignment
Recorded:
Jul 23, 2020
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July 24, 2020
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Speaker(s):
Shibani Santurkar, MIT
Machine learning models today achieve impressive performance on challenging benchmark tasks. Yet, these models remain remarkably brittle---small perturbations of natural inputs, known as adversarial examples, can severely degrade their behavior. Why...
Embedded thumbnail for Decoding Animal Behavior Through Pose Tracking
Recorded:
Jul 9, 2020
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July 10, 2020
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Speaker(s):
Talmo Pereira, Princeton University
Talmo Pereira, Princeton University Behavioral quantification, the problem of measuring and describing how an animal interacts with the world, has been gaining increasing attention across disciplines as new computational methods emerge to automate...
Embedded thumbnail for Principles and applications of relational inductive biases in deep learning
Recorded:
Apr 11, 2019
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April 19, 2019
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CBMM Speaker(s):
Kelsey Allen
Kelsey Allen, MIT Common intuition posits that deep learning has succeeded because of its ability to assume very little structure in the data it receives, instead learning that structure from large numbers of training examples. However, recent work...

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